BIOPAX-Explorer is a Python package, designed to ease the manipulation of BIOPAX datasets.
It exploits RDF and SPARQL, using a simple object-oriented, domain specific syntax. It includes an Object Triple Mapping mechanism with a simple object-oriented query pattern syntax.
It enables non expert python user to:
Explore exhaustively Biopax dataset from file or SPARQL entrypoint, even very large dataset.
Bypass the memory limits when a complex SPARQL query is mapped to a very large dataset. It uses SPARQL code generation and a memory cache mechanism.
Entity oriented query and result sets construction .
Learn to write complex SPARQL queries for RDF datasets dedicated to biological networks.