BiochemicalPathwayStep#
- class biopax-explorer.biopax.biochemicalpathwaystep.BiochemicalPathwayStep(*args, **kwargs)[source]#
Bases:
PathwayStepClass BiochemicalPathwayStep
Definition: Imposes ordering on a step in a biochemical pathway. Retionale: A
biochemical reaction can be reversible by itself, but can be physiologically directed in the context of a pathway, for instance due to flux of reactants and products. Usage: Only one conversion interaction can be ordered at a time, but multiple catalysis or modulation instances can be part of one step.
code generator : rdfobj (author F.Moreews 2023-2024).
Methods
get_comment()Attribute _comment getter
get_evidence()Attribute _evidence getter
get_nextStep()Attribute _nextStep getter
Attribute _stepConversion getter
Attribute _stepDirection getter
get_stepProcess()Attribute _stepProcess getter
attribute_type_by_name
get_uri_string
object_attributes
set_comment
set_evidence
set_nextStep
set_stepConversion
set_stepDirection
set_stepProcess
set_uri_string
to_json
type_attributes
Methods Summary
Attribute _stepConversion getter
Attribute _stepDirection getter
set_stepConversion(value)set_stepDirection(value)set_uri_string(uristr)to_json()Methods Documentation
- get_stepConversion()[source]#
- Attribute _stepConversion getter
The central process that take place at this step of the biochemical pathway.
- get_stepDirection()[source]#
- Attribute _stepDirection getter
Direction of the conversion in this particular pathway context. This property
can be used for annotating direction of enzymatic activity. Even if an enzyme catalyzes a reaction reversibly, the flow of matter through the pathway will force the equilibrium in a given direction for that particular pathway.