Pattern#

class biopax-explorer.pattern.pattern.Pattern[source]#

Bases: Pattern

This class holds a list of Step objects containing Patterns or LocalProcessings. It abstracts a query pattern.

Methods

addStep(step[, operator, do_pk_only, ...])

Adds a processing step to the pattern.

byReference([do_pk_only])

Sets whether processing is done by reference.

define(*args)

Shortcut to simplify the usage of processing steps.

definePostPump(level)

Defines a post-pump processing step.