GeneticInteraction#

class biopax-explorer.biopax.geneticinteraction.GeneticInteraction(*args, **kwargs)[source]#

Bases: Interaction

Class GeneticInteraction

Definition : Genetic interactions between genes occur when two genetic

perturbations (e.g. mutations) have a combined phenotypic effect not caused by either perturbation alone. A gene participant in a genetic interaction represents the gene that is perturbed. Genetic interactions are not physical interactions but logical (AND) relationships. Their physical manifestations can be complex and span an arbitarily long duration. Rationale: Currently, BioPAX provides a simple definition that can capture most genetic interactions described in the literature. In the future, if required, the definition can be extended to capture other logical relationships and different, participant specific phenotypes. Example: A synthetic lethal interaction occurs when cell growth is possible without either gene A OR B, but not without both gene A AND B. If you knock out A and B together, the cell will die.

code generator : rdfobj (author F.Moreews 2023-2024).

Methods

`get_availability`()	Attribute _availability getter
`get_comment`()	Attribute _comment getter
`get_dataSource`()	Attribute _dataSource getter
`get_displayName`()	Attribute _displayName getter
`get_evidence`()	Attribute _evidence getter
`get_interactionScore`()	Attribute _interactionScore getter
`get_interactionType`()	Attribute _interactionType getter
`get_name`()	Attribute _name getter
`get_participant`()	Attribute _participant getter
`get_phenotype`()	Attribute _phenotype getter
`get_standardName`()	Attribute _standardName getter
`get_xref`()	Attribute _xref getter

attribute_type_by_name
get_uri_string
object_attributes
set_availability
set_comment
set_dataSource
set_displayName
set_evidence
set_interactionScore
set_interactionType
set_name
set_participant
set_phenotype
set_standardName
set_uri_string
set_xref
to_json
type_attributes

Methods Summary

`attribute_type_by_name`()
`get_interactionScore`()	Attribute _interactionScore getter
`get_phenotype`()	Attribute _phenotype getter
`get_uri_string`()
`object_attributes`()
`set_interactionScore`(value)
`set_phenotype`(value)
`set_uri_string`(uristr)
`to_json`()
`type_attributes`()

Methods Documentation

attribute_type_by_name()[source]#

get_interactionScore()[source]#

Attribute _interactionScore getter: The score of an interaction e.g. a genetic interaction score.

get_phenotype()[source]#

Attribute _phenotype getter: The phenotype quality used to define this genetic interaction e.g. viability.

get_uri_string()[source]#

object_attributes()[source]#

set_interactionScore(value)[source]#

set_phenotype(value)[source]#

set_uri_string(uristr)[source]#

to_json()[source]#

type_attributes()[source]#