Complex#

class biopax-explorer.biopax.complex.Complex(*args, **kwargs)[source]#

Bases: PhysicalEntity

Class Complex

Definition: A physical entity whose structure is comprised of other physical

entities bound to each other covalently or non-covalently, at least one of which is a macromolecule (e.g. protein, DNA, or RNA) and the Stoichiometry of the components are known. Comment: Complexes must be stable enough to function as a biological unit; in general, the temporary association of an enzyme with its substrate(s) should not be considered or represented as a complex. A complex is the physical product of an interaction (complexAssembly) and is not itself considered an interaction. The boundaries on the size of complexes described by this class are not defined here, although possible, elements of the cell such a mitochondria would typically not be described using this class (later versions of this ontology may include a cellularComponent class to represent these). The strength of binding cannot be described currently, but may be included in future versions of the ontology, depending on community need. Examples: Ribosome, RNA polymerase II. Other examples of this class include complexes of multiple protein monomers and complexes of proteins and small molecules.

code generator : rdfobj (author F.Moreews 2023-2024).

Methods

get_availability()	Attribute _availability getter
get_cellularLocation()	Attribute _cellularLocation getter
get_comment()	Attribute _comment getter
get_component()	Attribute _component getter
get_componentStoichiometry()	Attribute _componentStoichiometry getter
get_dataSource()	Attribute _dataSource getter
get_displayName()	Attribute _displayName getter
get_evidence()	Attribute _evidence getter
get_feature()	Attribute _feature getter
get_memberPhysicalEntity()	Attribute _memberPhysicalEntity getter
get_name()	Attribute _name getter
get_notFeature()	Attribute _notFeature getter
get_standardName()	Attribute _standardName getter
get_xref()	Attribute _xref getter

attribute_type_by_name
get_uri_string
object_attributes
set_availability
set_cellularLocation
set_comment
set_component
set_componentStoichiometry
set_dataSource
set_displayName
set_evidence
set_feature
set_memberPhysicalEntity
set_name
set_notFeature
set_standardName
set_uri_string
set_xref
to_json
type_attributes

Methods Summary

attribute_type_by_name()
get_component()	Attribute _component getter
get_componentStoichiometry()	Attribute _componentStoichiometry getter
get_uri_string()
object_attributes()
set_component(value)
set_componentStoichiometry(value)
set_uri_string(uristr)
to_json()
type_attributes()

Methods Documentation

attribute_type_by_name()[source]#

get_component()[source]#

Attribute _component getter

get_componentStoichiometry()[source]#

Attribute _componentStoichiometry getter

The stoichiometry of components in a complex

get_uri_string()[source]#

object_attributes()[source]#

set_component(value)[source]#

set_componentStoichiometry(value)[source]#

set_uri_string(uristr)[source]#

to_json()[source]#

type_attributes()[source]#