Xref#

class biopax-explorer.biopax.xref.Xref(*args, **kwargs)[source]#

Bases: UtilityClass

Class Xref

Definition: A reference from an instance of a class in this ontology to an

object in an external resource. Rationale: Xrefs in the future can be removed in the future in favor of explicit miram links. Usage: For most cases one of the subclasses of xref should be used.

code generator : rdfobj (author F.Moreews 2023-2024).

Methods

`get_comment`()	Attribute _comment getter
`get_db`()	Attribute _db getter
`get_dbVersion`()	Attribute _dbVersion getter
`get_id`()	Attribute _id getter
`get_idVersion`()	Attribute _idVersion getter

attribute_type_by_name
get_uri_string
object_attributes
set_comment
set_db
set_dbVersion
set_id
set_idVersion
set_uri_string
to_json
type_attributes

Methods Summary

`attribute_type_by_name`()
`get_db`()	Attribute _db getter
`get_dbVersion`()	Attribute _dbVersion getter
`get_id`()	Attribute _id getter
`get_idVersion`()	Attribute _idVersion getter
`get_uri_string`()
`object_attributes`()
`set_db`(value)
`set_dbVersion`(value)
`set_id`(value)
`set_idVersion`(value)
`set_uri_string`(uristr)
`to_json`()
`type_attributes`()

Methods Documentation

attribute_type_by_name()[source]#

get_db()[source]#

Attribute _db getter: The name of the external database to which this xref refers.

get_dbVersion()[source]#

Attribute _dbVersion getter
The version of the external database in which this xref was last known to be

valid. Resources may have recommendations for referencing dataset versions. For instance, the Gene Ontology recommends listing the date the GO terms were downloaded.

get_id()[source]#

Attribute _id getter
The primary identifier in the external database of the object to which this xref

refers.

get_idVersion()[source]#

Attribute _idVersion getter
The version number of the identifier (ID). E.g. The RefSeq accession number

NM_005228.3 should be split into NM_005228 as the ID and 3 as the ID-VERSION.

get_uri_string()[source]#

object_attributes()[source]#

set_db(value)[source]#

set_dbVersion(value)[source]#

set_id(value)[source]#

set_idVersion(value)[source]#

set_uri_string(uristr)[source]#

to_json()[source]#

type_attributes()[source]#