ModificationFeature#
- class biopax-explorer.biopax.modificationfeature.ModificationFeature(*args, **kwargs)[source]#
Bases:
EntityFeatureClass ModificationFeature
Definition: An entity feature that represents the covalently modified state of
a dna, rna or a protein. Rationale: In Biology, identity of DNA, RNA and Protein entities are defined around a wildtype sequence. Covalent modifications to this basal sequence are represented using modificaton features. Since small molecules are identified based on their chemical structure, not sequence, a covalent modification to a small molecule would result in a different molecule. Usage: The added groups should be simple and stateless, such as phosphate or methyl groups and are captured by the modificationType controlled vocabulary. In other cases, such as covalently linked proteins, use CovalentBindingFeature instead. Instances: A phosphorylation on a protein, a methylation on a DNA.
code generator : rdfobj (author F.Moreews 2023-2024).
Methods
get_comment()Attribute _comment getter
get_evidence()Attribute _evidence getter
get_featureLocation()Attribute _featureLocation getter
get_featureLocationType()Attribute _featureLocationType getter
get_memberFeature()Attribute _memberFeature getter
Attribute _modificationType getter
attribute_type_by_name
get_uri_string
object_attributes
set_comment
set_evidence
set_featureLocation
set_featureLocationType
set_memberFeature
set_modificationType
set_uri_string
to_json
type_attributes
Methods Summary
Attribute _modificationType getter
set_modificationType(value)set_uri_string(uristr)to_json()Methods Documentation