Evidence#

class biopax-explorer.biopax.evidence.Evidence(*args, **kwargs)[source]#

Bases: object

Class Evidence

Definition: The support for a particular assertion, such as the existence of an

interaction or pathway. Usage: At least one of confidence, evidenceCode, or experimentalForm must be instantiated when creating an evidence instance. XREF may reference a publication describing the experimental evidence using a publicationXref or may store a description of the experiment in an experimental description database using a unificationXref (if the referenced experiment is the same) or relationshipXref (if it is not identical, but similar in some way e.g. similar in protocol). Evidence is meant to provide more information than just an xref to the source paper. Examples: A description of a molecular binding assay that was used to detect a protein-protein interaction.

code generator : rdfobj (author F.Moreews 2023-2024).

Methods

`get_confidence`()	Attribute _confidence getter
`get_evidenceCode`()	Attribute _evidenceCode getter
`get_experimentalForm`()	Attribute _experimentalForm getter
`get_xref`()	Attribute _xref getter

attribute_type_by_name
get_uri_string
object_attributes
set_confidence
set_evidenceCode
set_experimentalForm
set_uri_string
set_xref
to_json
type_attributes

Methods Summary

`attribute_type_by_name`()
`get_confidence`()	Attribute _confidence getter
`get_evidenceCode`()	Attribute _evidenceCode getter
`get_experimentalForm`()	Attribute _experimentalForm getter
`get_uri_string`()
`get_xref`()	Attribute _xref getter
`object_attributes`()
`set_confidence`(value)
`set_evidenceCode`(value)
`set_experimentalForm`(value)
`set_uri_string`(uristr)
`set_xref`(value)
`to_json`()
`type_attributes`()

Methods Documentation

attribute_type_by_name()[source]#

get_confidence()[source]#

Attribute _confidence getter: Confidence in the containing instance. Usually a statistical measure.

get_evidenceCode()[source]#

Attribute _evidenceCode getter
A pointer to a term in an external controlled vocabulary, such as the GO, PSI-MI

or BioCyc evidence codes, that describes the nature of the support, such as ‘traceable author statement’ or ‘yeast two-hybrid’.

get_experimentalForm()[source]#

Attribute _experimentalForm getter: The experimental forms associated with an evidence instance.

get_uri_string()[source]#

get_xref()[source]#

Attribute _xref getter
Values of this property define external cross-references from this entity to

entities in external databases.

object_attributes()[source]#

set_confidence(value)[source]#

set_evidenceCode(value)[source]#

set_experimentalForm(value)[source]#

set_uri_string(uristr)[source]#

set_xref(value)[source]#

to_json()[source]#

type_attributes()[source]#