SmallMoleculeReference#

class biopax-explorer.biopax.smallmoleculereference.SmallMoleculeReference(*args, **kwargs)[source]#

Bases: EntityReference

Class SmallMoleculeReference

A small molecule reference is a grouping of several small molecule entities

that have the same chemical structure. Members can differ in celular location and bound partners. Covalent modifications of small molecules are not considered as state changes but treated as different molecules.

code generator : rdfobj (author F.Moreews 2023-2024).

Methods

`get_chemicalFormula`()	Attribute _chemicalFormula getter
`get_comment`()	Attribute _comment getter
`get_displayName`()	Attribute _displayName getter
`get_entityFeature`()	Attribute _entityFeature getter
`get_entityReferenceType`()	Attribute _entityReferenceType getter
`get_evidence`()	Attribute _evidence getter
`get_memberEntityReference`()	Attribute _memberEntityReference getter
`get_molecularWeight`()	Attribute _molecularWeight getter
`get_name`()	Attribute _name getter
`get_standardName`()	Attribute _standardName getter
`get_structure`()	Attribute _structure getter
`get_xref`()	Attribute _xref getter

attribute_type_by_name
get_uri_string
object_attributes
set_chemicalFormula
set_comment
set_displayName
set_entityFeature
set_entityReferenceType
set_evidence
set_memberEntityReference
set_molecularWeight
set_name
set_standardName
set_structure
set_uri_string
set_xref
to_json
type_attributes

Methods Summary

`attribute_type_by_name`()
`get_chemicalFormula`()	Attribute _chemicalFormula getter
`get_molecularWeight`()	Attribute _molecularWeight getter
`get_structure`()	Attribute _structure getter
`get_uri_string`()
`object_attributes`()
`set_chemicalFormula`(value)
`set_molecularWeight`(value)
`set_structure`(value)
`set_uri_string`(uristr)
`to_json`()
`type_attributes`()

Methods Documentation

attribute_type_by_name()[source]#

get_chemicalFormula()[source]#

Attribute _chemicalFormula getter
The chemical formula of the small molecule. Note: chemical formula can also be

stored in the STRUCTURE property (in CML). In case of disagreement between the value of this property and that in the CML file, the CML value takes precedence.

get_molecularWeight()[source]#

Attribute _molecularWeight getter: Defines the molecular weight of the molecule, in daltons.

get_structure()[source]#

Attribute _structure getter
Defines the chemical structure and other information about this molecule, using

an instance of class chemicalStructure.

get_uri_string()[source]#

object_attributes()[source]#

set_chemicalFormula(value)[source]#

set_molecularWeight(value)[source]#

set_structure(value)[source]#

set_uri_string(uristr)[source]#

to_json()[source]#

type_attributes()[source]#