Gene#
- class biopax-explorer.biopax.gene.Gene(*args, **kwargs)[source]#
Bases:
EntityClass Gene
Definition: A continuant that encodes information that can be inherited through
replication. Rationale: Gene is an abstract continuant that can be best described as a “schema”, a common conception commonly used by biologists to demark a component within genome. In BioPAX, Gene is considered a generalization over eukaryotic and prokaryotic genes and is used only in genetic interactions. Gene is often confused with DNA and RNA fragments, however, these are considered the physical encoding of a gene. N.B. Gene expression regulation makes use of DNA and RNA physical entities and not this class. Usage: Gene should only be used for describing GeneticInteractions.
code generator : rdfobj (author F.Moreews 2023-2024).
Methods
get_availability()Attribute _availability getter
get_comment()Attribute _comment getter
get_dataSource()Attribute _dataSource getter
get_displayName()Attribute _displayName getter
get_evidence()Attribute _evidence getter
get_name()Attribute _name getter
Attribute _organism getter
get_standardName()Attribute _standardName getter
get_xref()Attribute _xref getter
attribute_type_by_name
get_uri_string
object_attributes
set_availability
set_comment
set_dataSource
set_displayName
set_evidence
set_name
set_organism
set_standardName
set_uri_string
set_xref
to_json
type_attributes
Methods Summary
Attribute _organism getter
set_organism(value)set_uri_string(uristr)to_json()Methods Documentation
- get_organism()[source]#
- Attribute _organism getter
An organism, e.g. ‘Homo sapiens’. This is the organism that the entity is found
in. Pathways may not have an organism associated with them, for instance, reference pathways from KEGG. Sequence-based entities (DNA, protein, RNA) may contain an xref to a sequence database that contains organism information, in which case the information should be consistent with the value for ORGANISM.