FragmentFeature#
- class biopax-explorer.biopax.fragmentfeature.FragmentFeature(*args, **kwargs)[source]#
Bases:
EntityFeatureClass FragmentFeature
Definition: An entity feature that represents the resulting physical entity
subsequent to a cleavage or degradation event. Usage: Fragment Feature can be used to cover multiple types of modfications to the sequence of the physical entity: 1. A protein with a single cleavage site that converts the protein into two fragments (e.g. pro-insulin converted to insulin and C-peptide). TODO: CV term for sequence fragment? PSI-MI CV term for cleavage site? 2. A protein with two cleavage sites that removes an internal sequence e.g. an intein i.e. ABC -> A 3. Cleavage of a circular sequence e.g. a plasmid. In the case of removal ( e.g. intron) the fragment that is removed is specified in the feature location property. In the case of a “cut” (e.g. restriction enzyme cut site) the location of the cut is specified instead. Examples: Insulin Hormone
code generator : rdfobj (author F.Moreews 2023-2024).
Methods
get_comment()Attribute _comment getter
get_evidence()Attribute _evidence getter
get_featureLocation()Attribute _featureLocation getter
get_featureLocationType()Attribute _featureLocationType getter
get_memberFeature()Attribute _memberFeature getter
attribute_type_by_name
get_uri_string
object_attributes
set_comment
set_evidence
set_featureLocation
set_featureLocationType
set_memberFeature
set_uri_string
to_json
type_attributes
Methods Summary
set_uri_string(uristr)to_json()Methods Documentation