ComplexAssembly#

class biopax-explorer.biopax.complexassembly.ComplexAssembly(*args, **kwargs)[source]#

Bases: Conversion

Class ComplexAssembly

Definition: A conversion interaction in which a set of physical entities, at

least one being a macromolecule (e.g. protein, RNA, DNA), aggregate to from a complex physicalEntity. One of the participants of a complexAssembly must be an instance of the class Complex. The modification of the physicalentities involved in the ComplexAssembly is captured via BindingFeature class. Usage: This class is also used to represent complex disassembly. The assembly or disassembly of a complex is often a spontaneous process, in which case the direction of the complexAssembly (toward either assembly or disassembly) should be specified via the SPONTANEOUS property. Conversions in which participants obtain or lose CovalentBindingFeatures ( e.g. glycolysation of proteins) should be modeled with BiochemicalReaction. Synonyms: aggregation, complex formation Examples: Assembly of the TFB2 and TFB3 proteins into the TFIIH complex, and assembly of the ribosome through aggregation of its subunits.

code generator : rdfobj (author F.Moreews 2023-2024).

Methods

get_availability()

Attribute _availability getter

get_comment()

Attribute _comment getter

get_conversionDirection()

Attribute _conversionDirection getter

get_dataSource()

Attribute _dataSource getter

get_displayName()

Attribute _displayName getter

get_evidence()

Attribute _evidence getter

get_interactionType()

Attribute _interactionType getter

get_left()

Attribute _left getter

get_name()

Attribute _name getter

get_participant()

Attribute _participant getter

get_participantStoichiometry()

Attribute _participantStoichiometry getter

get_right()

Attribute _right getter

get_spontaneous()

Attribute _spontaneous getter

get_standardName()

Attribute _standardName getter

get_xref()

Attribute _xref getter

attribute_type_by_name

get_uri_string

object_attributes

set_availability

set_comment

set_conversionDirection

set_dataSource

set_displayName

set_evidence

set_interactionType

set_left

set_name

set_participant

set_participantStoichiometry

set_right

set_spontaneous

set_standardName

set_uri_string

set_xref

to_json

type_attributes

Methods Summary

attribute_type_by_name()

get_uri_string()

object_attributes()

set_uri_string(uristr)

to_json()

type_attributes()

Methods Documentation

attribute_type_by_name()[source]#
get_uri_string()[source]#
object_attributes()[source]#
set_uri_string(uristr)[source]#
to_json()[source]#
type_attributes()[source]#