Conversion#
- class biopax-explorer.biopax.conversion.Conversion(*args, **kwargs)[source]#
Bases:
InteractionClass Conversion
Definition: An interaction in which molecules of one or more PhysicalEntity
pools are physically transformed and become a member of one or more other PhysicalEntity pools. Rationale: Conversion is Comments: Conversions in BioPAX are stoichiometric and closed world, i.e. it is assumed that all of the participants are listed. Both properties are due to the law of mass conservation. Usage: Subclasses of conversion represent different types of transformation reflected by the properties of different physicalEntity. BiochemicalReactions will change the ModificationFeatures on a PhysicalEntity, Transport will change the Cellular Location and ComplexAssembly will change BindingFeatures. Generic Conversion class should only be used when the modification does not fit into a any of these classes. Example: Opening of a voltage gated channel.
code generator : rdfobj (author F.Moreews 2023-2024).
Methods
get_availability()Attribute _availability getter
get_comment()Attribute _comment getter
Attribute _conversionDirection getter
get_dataSource()Attribute _dataSource getter
get_displayName()Attribute _displayName getter
get_evidence()Attribute _evidence getter
get_interactionType()Attribute _interactionType getter
get_left()Attribute _left getter
get_name()Attribute _name getter
get_participant()Attribute _participant getter
Attribute _participantStoichiometry getter
Attribute _right getter
Attribute _spontaneous getter
get_standardName()Attribute _standardName getter
get_xref()Attribute _xref getter
attribute_type_by_name
get_uri_string
object_attributes
set_availability
set_comment
set_conversionDirection
set_dataSource
set_displayName
set_evidence
set_interactionType
set_left
set_name
set_participant
set_participantStoichiometry
set_right
set_spontaneous
set_standardName
set_uri_string
set_xref
to_json
type_attributes
Methods Summary
Attribute _conversionDirection getter
get_left()Attribute _left getter
Attribute _participantStoichiometry getter
Attribute _right getter
Attribute _spontaneous getter
set_conversionDirection(value)set_left(value)set_participantStoichiometry(value)set_right(value)set_spontaneous(value)set_uri_string(uristr)to_json()Methods Documentation
- get_conversionDirection()[source]#
- Attribute _conversionDirection getter
This property represents the direction of the reaction. If a reaction will run
in a single direction under all biological contexts then it is considered irreversible and has a direction. Otherwise it is reversible.
- get_left()[source]#
- Attribute _left getter
The participants on the left side of the conversion interaction. Since
conversion interactions may proceed in either the left-to-right or right-to-left direction, occupants of the left property may be either reactants or products. left is a sub-property of participants.
- get_participantStoichiometry()[source]#
- Attribute _participantStoichiometry getter
Stoichiometry of the left and right participants.
- get_right()[source]#
- Attribute _right getter
The participants on the right side of the conversion interaction. Since
conversion interactions may proceed in either the left-to-right or right-to-left direction, occupants of the RIGHT property may be either reactants or products. RIGHT is a sub-property of PARTICIPANTS.