Stoichiometry#

class biopax-explorer.biopax.stoichiometry.Stoichiometry(*args, **kwargs)[source]#

Bases: UtilityClass

Class Stoichiometry

Definition: Stoichiometric coefficient of a physical entity in the context of a

conversion or complex. Usage: For each participating element there must be 0 or 1 stoichiometry element. A non-existing stoichiometric element is treated as unknown. This is an n-ary bridge for left, right and component properties. Relative stoichiometries ( e.g n, n+1) often used for describing polymerization is not supported.

code generator : rdfobj (author F.Moreews 2023-2024).

Methods

get_comment()	Attribute _comment getter
get_physicalEntity()	Attribute _physicalEntity getter
get_stoichiometricCoefficient()	Attribute _stoichiometricCoefficient getter

attribute_type_by_name
get_uri_string
object_attributes
set_comment
set_physicalEntity
set_stoichiometricCoefficient
set_uri_string
to_json
type_attributes

Methods Summary

attribute_type_by_name()
get_physicalEntity()	Attribute _physicalEntity getter
get_stoichiometricCoefficient()	Attribute _stoichiometricCoefficient getter
get_uri_string()
object_attributes()
set_physicalEntity(value)
set_stoichiometricCoefficient(value)
set_uri_string(uristr)
to_json()
type_attributes()

Methods Documentation

attribute_type_by_name()[source]#

get_physicalEntity()[source]#

Attribute _physicalEntity getter

The physical entity to be annotated with stoichiometry.

get_stoichiometricCoefficient()[source]#

Attribute _stoichiometricCoefficient getter

Stoichiometric coefficient for one of the entities in an interaction or complex.

This value can be any rational number. Generic values such as “n” or “n+1” should not be used - polymers are currently not covered.

get_uri_string()[source]#

object_attributes()[source]#

set_physicalEntity(value)[source]#

set_stoichiometricCoefficient(value)[source]#

set_uri_string(uristr)[source]#

to_json()[source]#

type_attributes()[source]#