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biopax-explorer 1.0 documentation
biopax-explorer 1.0 documentation
  • Dna
  • bp_template
  • BPSerializer
  • config
  • graphString
  • CytoViewer
  • Factory
  • GraphDatasetLayerGT
  • GraphDatasetLayerNX
  • GraphModelLayer
  • BIOPAXStoreClient
  • control_by_controlled
  • control_by_controller
  • Rack
  • blacklistFilter
  • usedToProduceProcessing
  • BlackListFilter
  • ProcessingCollection
  • dot2png
  • dot2svg
  • dottext2png
  • dottext2svg
  • writePatternGraphView
  • DataPump
  • LocalProcessing
  • PK
  • Pattern
  • PatternExecutor
  • ProcessingCollection
  • Step
  • BindingFeature
  • BiochemicalPathwayStep
  • BiochemicalReaction
  • BioSource
  • Catalysis
  • CellularLocationVocabulary
  • CellVocabulary
  • ChemicalStructure
  • Complex
  • ComplexAssembly
  • Control
  • ControlledVocabulary
  • Conversion
  • CovalentBindingFeature
  • Degradation
  • DeltaG
  • Dna
  • DnaReference
  • DnaRegion
  • DnaRegionReference
  • Entity
  • EntityFeature
  • EntityReference
  • EntityReferenceTypeVocabulary
  • Evidence
  • EvidenceCodeVocabulary
  • ExperimentalForm
  • ExperimentalFormVocabulary
  • FragmentFeature
  • Gene
  • GeneticInteraction
  • Interaction
  • InteractionVocabulary
  • KPrime
  • ModificationFeature
  • Modulation
  • MolecularInteraction
  • Pathway
  • PathwayStep
  • PhenotypeVocabulary
  • PhysicalEntity
  • Protein
  • ProteinReference
  • Provenance
  • PublicationXref
  • RelationshipTypeVocabulary
  • RelationshipXref
  • Rna
  • RnaReference
  • RnaRegion
  • RnaRegionReference
  • Score
  • SequenceInterval
  • SequenceLocation
  • SequenceModificationVocabulary
  • SequenceRegionVocabulary
  • SequenceSite
  • SmallMolecule
  • SmallMoleculeReference
  • Stoichiometry
  • TemplateReaction
  • TemplateReactionRegulation
  • TissueVocabulary
  • Transport
  • TransportWithBiochemicalReaction
  • UnificationXref
  • UtilityClass
  • Xref
  • tojson
  • tostring
  • CustomEncoder
  • CustomEncoderShort
  • class_children
  • classes
  • classesDict
  • classes_children
  • createInstance
  • define_model_instance
  • domain
  • entityToString
  • get_parent_hierarchy
  • modelPopulator
  • parentTree
  • prefix
  • shortPrefix
  • PackageModelPopulator
  • get_validator_config
  • ignore_error
  • log_error
  • raise_error
  • update_validator_config
  • BaseDecorator
  • CValidateArgType
  • FullValidateArgType
  • ValidationDecorator
  • bindingfeature_DocHelper
  • biochemicalpathwaystep_DocHelper
  • biochemicalreaction_DocHelper
  • biosource_DocHelper
  • catalysis_DocHelper
  • cellularlocationvocabulary_DocHelper
  • cellvocabulary_DocHelper
  • chemicalstructure_DocHelper
  • complex_DocHelper
  • complexassembly_DocHelper
  • control_DocHelper
  • controlledvocabulary_DocHelper
  • conversion_DocHelper
  • covalentbindingfeature_DocHelper
  • degradation_DocHelper
  • deltag_DocHelper
  • dna_DocHelper
  • dnareference_DocHelper
  • dnaregion_DocHelper
  • dnaregionreference_DocHelper
  • entity_DocHelper
  • entityfeature_DocHelper
  • entityreference_DocHelper
  • entityreferencetypevocabulary_DocHelper
  • evidence_DocHelper
  • evidencecodevocabulary_DocHelper
  • experimentalform_DocHelper
  • experimentalformvocabulary_DocHelper
  • fragmentfeature_DocHelper
  • gene_DocHelper
  • geneticinteraction_DocHelper
  • interaction_DocHelper
  • interactionvocabulary_DocHelper
  • kprime_DocHelper
  • modificationfeature_DocHelper
  • modulation_DocHelper
  • molecularinteraction_DocHelper
  • pathway_DocHelper
  • pathwaystep_DocHelper
  • phenotypevocabulary_DocHelper
  • physicalentity_DocHelper
  • protein_DocHelper
  • proteinreference_DocHelper
  • provenance_DocHelper
  • publicationxref_DocHelper
  • relationshiptypevocabulary_DocHelper
  • relationshipxref_DocHelper
  • rna_DocHelper
  • rnareference_DocHelper
  • rnaregion_DocHelper
  • rnaregionreference_DocHelper
  • score_DocHelper
  • sequenceinterval_DocHelper
  • sequencelocation_DocHelper
  • sequencemodificationvocabulary_DocHelper
  • sequenceregionvocabulary_DocHelper
  • sequencesite_DocHelper
  • smallmolecule_DocHelper
  • smallmoleculereference_DocHelper
  • stoichiometry_DocHelper
  • templatereaction_DocHelper
  • templatereactionregulation_DocHelper
  • tissuevocabulary_DocHelper
  • transport_DocHelper
  • transportwithbiochemicalreaction_DocHelper
  • unificationxref_DocHelper
  • utilityclass_DocHelper
  • xref_DocHelper
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